You can draw figure using protein alignment file(*.aln)
|USAGE : python ProteinAlignment2Figure_v1.0.py ProteinAlignmentFile GeneInfoFile > out.svg|
Gene Info File
Gene info file contains gene or repeat information The header of Gene info File is below
|Gene info file header|
|Gene_name Type ChrNo Start end strand|
Each information is separated by tab mRNA,CDS,UTR and repeat can be Type +,- can be strand Repeat type has two strand 1 and 2. 1 means first repeat in repeat pair, 2 means second repeat in repeat pair.
If you want to change color, you have to change the code manually.