Difference between revisions of "Tips kang"
From Crop Genomics Lab.
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'''Softwares'''<br /> | '''Softwares'''<br /> | ||
''Deconseq'' <ref>[http://deconseq.sourceforge.net/ deconseq]</ref><br /> | ''Deconseq'' <ref>[http://deconseq.sourceforge.net/ deconseq]</ref><br /> | ||
− | Illumina read의 contamination을 확인한다. | + | Illumina read의 contamination을 확인한다.<br /> |
63:/data/program/deconseq-standalone-0.4.3 <br /> | 63:/data/program/deconseq-standalone-0.4.3 <br /> | ||
− | /usr/bin/perl deconseq.pl -keep_tmp_files -f 800_both.fq -dbs bact,vir,arch -dbs_retain gmax <br /> | + | /usr/bin/perl deconseq.pl -keep_tmp_files -f 800_both.fq -dbs bact,vir,arch -dbs_retain gmax <br /><br /> |
+ | '''추천 논문'''<br /> | ||
+ | Paterson, A.H., M. Freeling, H. Tang and X. Wang. 2010. Insights from the comparison of plant genome sequences. Annual Review of Plant Biology 61: 349-372. <ref>[http://www.annualreviews.org/doi/abs/10.1146/annurev-arplant-042809-112235 Paterson, A.H., M. Freeling, H. Tang and X. Wang. 2010. Insights from the comparison of plant genome sequences. Annual Review of Plant Biology 61: 349-372. ]</ref><br /> | ||
<references /> | <references /> |
Revision as of 06:21, 1 March 2014
Python
Fisher's exact test
from scipy import stats
oddsratio, pvalue = stats.fisher_exact([[A,B], [C, D]]) [1]
Excel
=TEXT(2.2323,"(0.00)")
(2.23)
Softwares
Deconseq [2]
Illumina read의 contamination을 확인한다.
63:/data/program/deconseq-standalone-0.4.3
/usr/bin/perl deconseq.pl -keep_tmp_files -f 800_both.fq -dbs bact,vir,arch -dbs_retain gmax
추천 논문
Paterson, A.H., M. Freeling, H. Tang and X. Wang. 2010. Insights from the comparison of plant genome sequences. Annual Review of Plant Biology 61: 349-372. [3]