Difference between revisions of "2021 sewon labnote"
From Crop Genomics Lab.
(Created page with "Jingpung resequencing - trimmomatic result TrimmomaticPE: Started with arguments: -phred33 jinpung_1.fastq.gz jinpung_2.fastq.gz output_forward_paired.fastq.gz output_forwar...") |
Revision as of 02:05, 15 March 2021
Jingpung resequencing - trimmomatic result
TrimmomaticPE: Started with arguments:
-phred33 jinpung_1.fastq.gz jinpung_2.fastq.gz output_forward_paired.fastq.gz output_forward_unpaired.fastq.gz output_reverse_paired.fastq.gz output_reverse_unpaired.fastq.gz ILLUMINACLIP:/data/Program/Trimmomatic-0.39/adapters/TruSeq3-PE.fa:2:30:10 SLIDINGWINDOW:4:20 MINLEN:36
Using PrefixPair: 'TACACTCTTTCCCTACACGACGCTCTTCCGATCT' and 'GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT' ILLUMINACLIP: Using 1 prefix pairs, 0 forward/reverse sequences, 0 forward only sequences, 0 reverse only sequences ll Input Read Pairs: 42918512 Both Surviving: 40100414 (93.43%) Forward Only Surviving: 2273317 (5.30%) Reverse Only Surviving: 297601 (0.69%) Dropped: 247180 (0.58%) TrimmomaticPE: Completed successfully
