Difference between revisions of "2017 Haneul Lab note"

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(Minyoung_UV_QTL)
(Minyoung_UV_QTL)
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== 1/9 ==
 
== 1/9 ==
 
=== Minyoung_UV_QTL ===
 
=== Minyoung_UV_QTL ===
parsing genotype data(Joinmap) and phenotype data to RQTL input(csv format)<br />
+
 
 +
parsing genotype data(Joinmap) and phenotype data to ICImapping format(bip format)
 +
 
 
using lgcombine.py(63:/data/skyts0401/Mungbean/MY_UV/)
 
using lgcombine.py(63:/data/skyts0401/Mungbean/MY_UV/)
 +
 +
find linkage group 2 map is wrong, construct map newly
  
 
=== Mungbean synchronous QTL ===
 
=== Mungbean synchronous QTL ===

Revision as of 09:36, 9 January 2017

Contents

1/9

Minyoung_UV_QTL

parsing genotype data(Joinmap) and phenotype data to ICImapping format(bip format)

using lgcombine.py(63:/data/skyts0401/Mungbean/MY_UV/)

find linkage group 2 map is wrong, construct map newly

Mungbean synchronous QTL

make loc file(244:/home/skyts0401/reseq/chr/Mungbean_chr_coseq_parse_seg_dist.loc)
missing > 10%, hetero > 10, depth < 3 marker is filtered

Mungbean pacbio assembly

moving SAM data(align reseq data on pacbio-scaffold) from NICEM server to 244 server (244:/kev8305/SK3/)