Difference between revisions of "2017 Haneul Lab note"
From Crop Genomics Lab.
(→Mungbean synchronous QTL) |
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=== Mungbean synchronous QTL === | === Mungbean synchronous QTL === | ||
− | make loc file(244:/home/skyts0401/reseq/chr/Mungbean_chr_coseq_parse_seg_dist.loc) | + | make loc file(244:/home/skyts0401/reseq/chr/Mungbean_chr_coseq_parse_seg_dist.loc)<br /> |
missing > 10%, hetero > 10, depth < 3 marker is filtered | missing > 10%, hetero > 10, depth < 3 marker is filtered | ||
=== Mungbean pacbio assembly === | === Mungbean pacbio assembly === | ||
moving SAM data(align reseq data on pacbio-scaffold) from NICEM server to 244 server (244:/kev8305/SK3/) | moving SAM data(align reseq data on pacbio-scaffold) from NICEM server to 244 server (244:/kev8305/SK3/) |
Revision as of 09:03, 9 January 2017
Contents |
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Minyoung_UV_QTL
parsing genotype data(Joinmap) and phenotype data to RQTL input(csv format) using lgcombine.py(63:/data/skyts0401/Mungbean/MY_UV/)
Mungbean synchronous QTL
make loc file(244:/home/skyts0401/reseq/chr/Mungbean_chr_coseq_parse_seg_dist.loc)
missing > 10%, hetero > 10, depth < 3 marker is filtered
Mungbean pacbio assembly
moving SAM data(align reseq data on pacbio-scaffold) from NICEM server to 244 server (244:/kev8305/SK3/)