Difference between revisions of "2017 Haneul Lab note"
From Crop Genomics Lab.
(→Minyoung_UV_QTL) |
(→Mungbean synchronous QTL) |
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=== Mungbean synchronous QTL === | === Mungbean synchronous QTL === | ||
make loc file(244:/home/skyts0401/reseq/chr/Mungbean_chr_coseq_parse_seg_dist.loc) | make loc file(244:/home/skyts0401/reseq/chr/Mungbean_chr_coseq_parse_seg_dist.loc) | ||
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missing > 10%, hetero > 10, depth < 3 marker is filtered | missing > 10%, hetero > 10, depth < 3 marker is filtered | ||
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while groupings them, find vr03, vr04 is combined in a group and vr05 is splited 2 groups, check it. | while groupings them, find vr03, vr04 is combined in a group and vr05 is splited 2 groups, check it. | ||
=== Mungbean pacbio assembly === | === Mungbean pacbio assembly === | ||
moving SAM data(align reseq data on pacbio-scaffold) from NICEM server to 244 server (244:/kev8305/SK3/) | moving SAM data(align reseq data on pacbio-scaffold) from NICEM server to 244 server (244:/kev8305/SK3/) |
Revision as of 09:40, 9 January 2017
Contents |
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Minyoung_UV_QTL
parsing genotype data(Joinmap) and phenotype data to ICImapping format(bip format) using lgcombine.py(63:/data/skyts0401/Mungbean/MY_UV/) find linkage group 2 map is wrong, construct map newly
Mungbean synchronous QTL
make loc file(244:/home/skyts0401/reseq/chr/Mungbean_chr_coseq_parse_seg_dist.loc) missing > 10%, hetero > 10, depth < 3 marker is filtered while groupings them, find vr03, vr04 is combined in a group and vr05 is splited 2 groups, check it.
Mungbean pacbio assembly
moving SAM data(align reseq data on pacbio-scaffold) from NICEM server to 244 server (244:/kev8305/SK3/)