Difference between revisions of "2017 Haneul Lab note"

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(Mungbean synchronous QTL)
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=== Mungbean synchronous QTL ===
 
=== Mungbean synchronous QTL ===
make loc file(244:/home/skyts0401/reseq/chr/Mungbean_chr_coseq_parse_seg_dist.loc)
+
make loc file(244:/home/skyts0401/reseq/chr/Mungbean_chr_coseq_parse_seg_dist.loc)<br />
 
missing > 10%, hetero > 10, depth < 3 marker is filtered
 
missing > 10%, hetero > 10, depth < 3 marker is filtered
  
 
=== Mungbean pacbio assembly ===
 
=== Mungbean pacbio assembly ===
 
moving SAM data(align reseq data on pacbio-scaffold) from NICEM server to 244 server (244:/kev8305/SK3/)
 
moving SAM data(align reseq data on pacbio-scaffold) from NICEM server to 244 server (244:/kev8305/SK3/)

Revision as of 09:03, 9 January 2017

Contents

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Minyoung_UV_QTL

parsing genotype data(Joinmap) and phenotype data to RQTL input(csv format) using lgcombine.py(63:/data/skyts0401/Mungbean/MY_UV/)

Mungbean synchronous QTL

make loc file(244:/home/skyts0401/reseq/chr/Mungbean_chr_coseq_parse_seg_dist.loc)
missing > 10%, hetero > 10, depth < 3 marker is filtered

Mungbean pacbio assembly

moving SAM data(align reseq data on pacbio-scaffold) from NICEM server to 244 server (244:/kev8305/SK3/)