2017 Haneul Lab note

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Minyoung_UV_QTL

parsing genotype data(Joinmap) and phenotype data to ICImapping format(bip format)
using lgcombine.py(63:/data/skyts0401/Mungbean/MY_UV/)
find linkage group 2 map is wrong, construct map newly

Mungbean synchronous QTL

make loc file(244:/home/skyts0401/reseq/chr/Mungbean_chr_coseq_parse_seg_dist.loc)

missing > 10%, hetero > 10, depth < 3 marker is filtered

while groupings them, find vr03, vr04 is combined in a group and vr05 is splited 2 groups, check it.

Mungbean pacbio assembly

moving SAM data(align reseq data on pacbio-scaffold) from NICEM server to 244 server (244:/kev8305/SK3/)