Difference between revisions of "2017 Haneul Lab note"
From Crop Genomics Lab.
(→Mungbean synchronous QTL) |
(→1/9) |
||
| Line 1: | Line 1: | ||
| − | == 1/9 == | + | == 1 / 9 == |
=== Minyoung_UV_QTL === | === Minyoung_UV_QTL === | ||
parsing genotype data(Joinmap) and phenotype data to ICImapping format(bip format) | parsing genotype data(Joinmap) and phenotype data to ICImapping format(bip format) | ||
| Line 12: | Line 12: | ||
=== Mungbean pacbio assembly === | === Mungbean pacbio assembly === | ||
moving SAM data(align reseq data on pacbio-scaffold) from NICEM server to 244 server (244:/kev8305/SK3/) | moving SAM data(align reseq data on pacbio-scaffold) from NICEM server to 244 server (244:/kev8305/SK3/) | ||
| + | |||
| + | == 1 / 10 == | ||
| + | === Minyoung_UV_QTL === | ||
| + | |||
| + | === Mungbean synchronous QTL === | ||
| + | |||
| + | === Mungbean pacbio assembly === | ||
| + | convert SAM format to BAM format (244:/kev8305/SK3/convertbam.sh) | ||
Revision as of 01:23, 10 January 2017
Contents |
1 / 9
Minyoung_UV_QTL
parsing genotype data(Joinmap) and phenotype data to ICImapping format(bip format) using lgcombine.py(63:/data/skyts0401/Mungbean/MY_UV/) find linkage group 2 map is wrong, construct map newly
Mungbean synchronous QTL
make loc file(244:/home/skyts0401/reseq/chr/Mungbean_chr_coseq_parse_seg_dist.loc) missing > 10%, hetero > 10, depth < 3 marker is filtered while grouping them, find vr03, vr04 is combined in a group and vr05 is splited 2 groups, check it.
Mungbean pacbio assembly
moving SAM data(align reseq data on pacbio-scaffold) from NICEM server to 244 server (244:/kev8305/SK3/)
1 / 10
Minyoung_UV_QTL
Mungbean synchronous QTL
Mungbean pacbio assembly
convert SAM format to BAM format (244:/kev8305/SK3/convertbam.sh)
