Difference between revisions of "2017 Jayern Lab note"
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python PE-pairing.py filtered.V_nipp_1_1.fq filtered.V_nipp_1_2.fq | python PE-pairing.py filtered.V_nipp_1_1.fq filtered.V_nipp_1_2.fq | ||
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| + | bwa index Vreflexo.fasta | ||
Revision as of 04:39, 6 March 2017
03/02
perl deconseq.pl -f 11_180bp_1.fastq -dbs chloro -i 90 -c 90
perl deconseq.pl -f 11_180bp_2.fastq -dbs chloro -i 90 -c 90
perl deconseq.pl -f 4_180bp_1.fastq -dbs chloro -i 90 -c 90
perl deconseq.pl -f 4_180bp_2.fastq -dbs chloro -i 90 -c 90
03/03
perl deconseq.pl -f V_nakashimae_2_1.fastq -dbs chloro -i 90 -c 90
perl deconseq.pl -f V_nakashimae_2_2.fastq -dbs chloro -i 90 -c 90
perl deconseq.pl -f V_nepal_1_1.fastq -dbs chloro -i 90 -c 90
perl deconseq.pl -f V_nepal_1_2.fastq -dbs chloro -i 90 -c 90
perl deconseq.pl -f V_nipp_1_1.fastq -dbs chloro -i 90 -c 90
perl deconseq.pl -f V_nipp_1_2.fastq -dbs chloro -i 90 -c 90
03/06
python PE-pairing.py filtered.V_nakashimae_2_1.fq filtered.V_nakashimae_2_2.fq
python PE-pairing.py filtered.V_nepal_1_1.fq filtered.V_nepal_1_2.fq
python PE-pairing.py filtered.V_nipp_1_1.fq filtered.V_nipp_1_2.fq
bwa index Vreflexo.fasta
