2017 Jayern Lab note

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03/02

perl deconseq.pl -f 11_180bp_1.fastq -dbs chloro -i 90 -c 90

perl deconseq.pl -f 11_180bp_2.fastq -dbs chloro -i 90 -c 90

perl deconseq.pl -f 4_180bp_1.fastq -dbs chloro -i 90 -c 90

perl deconseq.pl -f 4_180bp_2.fastq -dbs chloro -i 90 -c 90


03/03

perl deconseq.pl -f V_nakashimae_2_1.fastq -dbs chloro -i 90 -c 90

perl deconseq.pl -f V_nakashimae_2_2.fastq -dbs chloro -i 90 -c 90

perl deconseq.pl -f V_nepal_1_1.fastq -dbs chloro -i 90 -c 90

perl deconseq.pl -f V_nepal_1_2.fastq -dbs chloro -i 90 -c 90

perl deconseq.pl -f V_nipp_1_1.fastq -dbs chloro -i 90 -c 90

perl deconseq.pl -f V_nipp_1_2.fastq -dbs chloro -i 90 -c 90


03/06

python PE-pairing.py filtered.V_nakashimae_2_1.fq filtered.V_nakashimae_2_2.fq

python PE-pairing.py filtered.V_nepal_1_1.fq filtered.V_nepal_1_2.fq

python PE-pairing.py filtered.V_nipp_1_1.fq filtered.V_nipp_1_2.fq