Difference between revisions of "2017 Jungmin Lab note"
From Crop Genomics Lab.
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=== Jatropha === | === Jatropha === | ||
| − | Illumina PE trimming | + | ====Illumina PE trimming==== |
nohup ./IlluQC.pl -pe /NGS/NGS/JatrophaCurcas/DNA/Jatropha_1_PE_200bp_1.fastq /NGS/NGS/JatrophaCurcas/DNA/Jatropha_1_PE_200bp_2.fastq 2 A -p 8 & | nohup ./IlluQC.pl -pe /NGS/NGS/JatrophaCurcas/DNA/Jatropha_1_PE_200bp_1.fastq /NGS/NGS/JatrophaCurcas/DNA/Jatropha_1_PE_200bp_2.fastq 2 A -p 8 & | ||
| + | |||
| + | |||
| + | ====Gapfiller==== | ||
| + | https://www.baseclear.com/base/download/39GapFiller_v1-10_linux-x86_64.tar.gz | ||
== 1.10 == | == 1.10 == | ||
Revision as of 02:54, 9 January 2017
Contents |
1.9
Jatropha
Illumina PE trimming
nohup ./IlluQC.pl -pe /NGS/NGS/JatrophaCurcas/DNA/Jatropha_1_PE_200bp_1.fastq /NGS/NGS/JatrophaCurcas/DNA/Jatropha_1_PE_200bp_2.fastq 2 A -p 8 &
Gapfiller
https://www.baseclear.com/base/download/39GapFiller_v1-10_linux-x86_64.tar.gz
