2017 Jungmin Lab note

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Contents

1 1.9
- 1.1 Jatropha
  - 1.1.1 Illumina PE trimming
  - 1.1.2 Gapfiller
2 1.10

1.9

Jatropha

Illumina PE trimming

nohup ./IlluQC.pl -pe /NGS/NGS/JatrophaCurcas/DNA/Jatropha_1_PE_200bp_1.fastq /NGS/NGS/JatrophaCurcas/DNA/Jatropha_1_PE_200bp_2.fastq 2 A -p 8 &

Gapfiller

https://www.baseclear.com/base/download/39GapFiller_v1-10_linux-x86_64.tar.gz

1.10

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