2017 Mar Taeyoung Lab note
From Crop Genomics Lab.
Contents |
2017.3.2
Venn diagram using Organ data
Flower and Endosperm data were merged
python ~/py/MakeBinaryTableForOrthomcl.py group.txt > group.txt.binary.flr.and.end python ~/py/change_raw_and_col.py group.txt.binary.flr.and.end > group.txt.binary.flr.and.end.parsed python ~/py/MakeRawInputUsingBinary.py group.txt.binary.flr.and.end.parsed > group.txt.binary.flr.and.end.parsed.rawfile ..
2017.3.6
OrthoMcl again with cdhit file
True Orthologous retrieving
comparing length of peptide sequences with cutoff 0.1
/alima9002/63_backup/Jatropha/CDS/cdhit_blast_na1$ python length_polyporphism.py True_orhthologous.txt > True_orhthologous.txt.length.cutoff.0.1