Difference between revisions of "2017 May Taeyoung Lab note"
From Crop Genomics Lab.
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==Novel seq== | ==Novel seq== | ||
1. Align using mrFast | 1. Align using mrFast | ||
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2. assemble unmapped read using AbySS | 2. assemble unmapped read using AbySS | ||
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3. running novelseq | 3. running novelseq | ||
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/alima9002/program/novelseq-upload$ ./novel_cluster /alima9002/novelseq/raw CS-12.W82.mrfast.OEA.all.sam Gmax.275.sat.parsed /alima9002/novelseq/raw/chr /alima9002/novelseq/raw/CS-12.fastq.trimmed /alima9002/novelseq/raw/CS-12.W82.mrfast.out.all.ins.size 100000000 | /alima9002/program/novelseq-upload$ ./novel_cluster /alima9002/novelseq/raw CS-12.W82.mrfast.OEA.all.sam Gmax.275.sat.parsed /alima9002/novelseq/raw/chr /alima9002/novelseq/raw/CS-12.fastq.trimmed /alima9002/novelseq/raw/CS-12.W82.mrfast.out.all.ins.size 100000000 | ||
Revision as of 04:38, 11 May 2017
Novel seq
1. Align using mrFast
2. assemble unmapped read using AbySS
3. running novelseq
/alima9002/program/novelseq-upload$ ./novel_cluster /alima9002/novelseq/raw CS-12.W82.mrfast.OEA.all.sam Gmax.275.sat.parsed /alima9002/novelseq/raw/chr /alima9002/novelseq/raw/CS-12.fastq.trimmed /alima9002/novelseq/raw/CS-12.W82.mrfast.out.all.ins.size 100000000
