http://plantgenomics.snu.ac.kr/mediawiki-1.21.3/index.php?title=2017_Oct_Taeyoung_Lab_note&feed=atom&action=history
2017 Oct Taeyoung Lab note - Revision history
2024-03-29T13:14:19Z
Revision history for this page on the wiki
MediaWiki 1.21.3
http://plantgenomics.snu.ac.kr/mediawiki-1.21.3/index.php?title=2017_Oct_Taeyoung_Lab_note&diff=237156&oldid=prev
Alima90 at 05:07, 31 October 2017
2017-10-31T05:07:36Z
<p></p>
<table class='diff diff-contentalign-left'>
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr style='vertical-align: top;'>
<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 05:07, 31 October 2017</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 3:</td>
<td colspan="2" class="diff-lineno">Line 3:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===make bed===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===make bed===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>  /alima9002/program/plink-1.07-x86_64/plink --noweb --make-bed --ped variant.SG.vcf.without.vege.SNP.d3.m0.2.plink.Chr01.ped --map variant.SG.vcf.without.vege.SNP.d3.m0.2.plink.Chr01.map --missing-genotype N --out variant.SG.vcf.without.vege.SNP.d3.m0.2.plink.Chr01</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>  /alima9002/program/plink-1.07-x86_64/plink --noweb --make-bed --ped variant.SG.vcf.without.vege.SNP.d3.m0.2.plink.Chr01.ped --map variant.SG.vcf.without.vege.SNP.d3.m0.2.plink.Chr01.map --missing-genotype N --out variant.SG.vcf.without.vege.SNP.d3.m0.2.plink.Chr01</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">==maf==</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"> vcftools --vcf variant.SG.vcf.without.vege --maf 0.01 --out variant.SG.vcf.without.vege.maf0.01 --recode --remove-indels</ins></div></td></tr>
<!-- diff cache key mediawiki:diff:version:1.11a:oldid:237149:newid:237156 -->
</table>
Alima90
http://plantgenomics.snu.ac.kr/mediawiki-1.21.3/index.php?title=2017_Oct_Taeyoung_Lab_note&diff=237149&oldid=prev
Alima90: Created page with " ==Plink== ===make bed=== /alima9002/program/plink-1.07-x86_64/plink --noweb --make-bed --ped variant.SG.vcf.without.vege.SNP.d3.m0.2.plink.Chr01.ped --map variant.SG.vcf.wit..."
2017-10-23T09:58:24Z
<p>Created page with " ==Plink== ===make bed=== /alima9002/program/plink-1.07-x86_64/plink --noweb --make-bed --ped variant.SG.vcf.without.vege.SNP.d3.m0.2.plink.Chr01.ped --map variant.SG.vcf.wit..."</p>
<p><b>New page</b></p><div><br />
==Plink==<br />
===make bed===<br />
/alima9002/program/plink-1.07-x86_64/plink --noweb --make-bed --ped variant.SG.vcf.without.vege.SNP.d3.m0.2.plink.Chr01.ped --map variant.SG.vcf.without.vege.SNP.d3.m0.2.plink.Chr01.map --missing-genotype N --out variant.SG.vcf.without.vege.SNP.d3.m0.2.plink.Chr01</div>
Alima90