Difference between revisions of "2017 Taeyoung Lab note"
From Crop Genomics Lab.
| Line 4: | Line 4: | ||
==== Cdhit ==== | ==== Cdhit ==== | ||
| − | + | 193:/data2/alima90/program/cdhit/cd-hit -i Y.cds.fa -M 10000 -o Y.cds.fa.cdhit -T 5 | |
| − | + | ||
| − | + | ||
| − | |||
| − | |||
==== UV GBS mapping (w/ joinmap) ==== | ==== UV GBS mapping (w/ joinmap) ==== | ||
| − | ==== KaKs calculation using scripts provided by MCscanX ==== | + | |
| − | + | ||
| − | + | ==== KaKs calculation using scripts provided by MCscanX ==== | |
| − | + | ||
| − | + | 244 :python /alima9002/63_backup/Jatropha/CDS/run.kaks.py | |
Revision as of 04:33, 2 January 2017
Contents |
2017 1.2
Ongoing
Jatropha transcriptome Trinity assemble
Cdhit
193:/data2/alima90/program/cdhit/cd-hit -i Y.cds.fa -M 10000 -o Y.cds.fa.cdhit -T 5
UV GBS mapping (w/ joinmap)
KaKs calculation using scripts provided by MCscanX
244 :python /alima9002/63_backup/Jatropha/CDS/run.kaks.py
