Difference between revisions of "BZIP study"
From Crop Genomics Lab.
KangHeum Cho (Talk | contribs) (Created page with "= Identification = == Pfam-based approach == === [https://pfam.xfam.org/family/PF00170#tabview=tab0 bZIP_1] (PF00170) === ''Regarded as the main domain'' for bZIP transcripti...") |
KangHeum Cho (Talk | contribs) |
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= Identification = | = Identification = | ||
== Pfam-based approach == | == Pfam-based approach == | ||
− | === [https://pfam.xfam.org/family/PF00170#tabview=tab0 bZIP_1] (PF00170) | + | === HMM domain clans === |
+ | |||
+ | * [https://pfam.xfam.org/family/PF00170#tabview=tab0 bZIP_1] (PF00170) | ||
''Regarded as the main domain'' for bZIP transcription factor. Clearly distinguishes basic region and leucine zipper. | ''Regarded as the main domain'' for bZIP transcription factor. Clearly distinguishes basic region and leucine zipper. | ||
− | + | * [https://pfam.xfam.org/family/PF07716 bZIP_2] (PF07716) | |
Conserved basic region, weaker leucine zipper. | Conserved basic region, weaker leucine zipper. | ||
− | + | * bZIP_Maf (PF03131) | |
No distinct basic region. No clear leucine zipper interface. | No distinct basic region. No clear leucine zipper interface. |
Revision as of 04:36, 20 April 2019
Identification
Pfam-based approach
HMM domain clans
- bZIP_1 (PF00170)
Regarded as the main domain for bZIP transcription factor. Clearly distinguishes basic region and leucine zipper.
- bZIP_2 (PF07716)
Conserved basic region, weaker leucine zipper.
- bZIP_Maf (PF03131)
No distinct basic region. No clear leucine zipper interface.