Difference between revisions of "BZIP study"

From Crop Genomics Lab.
Jump to: navigation, search
(Created page with "= Identification = == Pfam-based approach == === [https://pfam.xfam.org/family/PF00170#tabview=tab0 bZIP_1] (PF00170) === ''Regarded as the main domain'' for bZIP transcripti...")
 
Line 1: Line 1:
 
= Identification =
 
= Identification =
 
== Pfam-based approach ==
 
== Pfam-based approach ==
=== [https://pfam.xfam.org/family/PF00170#tabview=tab0 bZIP_1] (PF00170) ===
+
=== HMM domain clans ===
 +
 
 +
* [https://pfam.xfam.org/family/PF00170#tabview=tab0 bZIP_1] (PF00170)
  
 
''Regarded as the main domain'' for bZIP transcription factor. Clearly distinguishes basic region and leucine zipper.
 
''Regarded as the main domain'' for bZIP transcription factor. Clearly distinguishes basic region and leucine zipper.
  
=== [https://pfam.xfam.org/family/PF07716 bZIP_2] (PF07716) ===
+
* [https://pfam.xfam.org/family/PF07716 bZIP_2] (PF07716)
  
 
Conserved basic region, weaker leucine zipper.
 
Conserved basic region, weaker leucine zipper.
  
=== bZIP_Maf (PF03131) ===
+
* bZIP_Maf (PF03131)
  
 
No distinct basic region. No clear leucine zipper interface.
 
No distinct basic region. No clear leucine zipper interface.

Revision as of 04:36, 20 April 2019

Identification

Pfam-based approach

HMM domain clans

Regarded as the main domain for bZIP transcription factor. Clearly distinguishes basic region and leucine zipper.

Conserved basic region, weaker leucine zipper.

  • bZIP_Maf (PF03131)

No distinct basic region. No clear leucine zipper interface.