CTAB method
Contents |
Protocol
1. Turn on the water bath (65°C)
2. Grind plant samples as fast as possible and put into 2ml tube (store -70°C before use)
3. Prepare the pre-heated CTAB buffer with 2% PVPP and 2% β-mercaptoethanol(750ul/sample)
4. Incubate samples with CTAB buffer at 65°C water bath for 30min (gently inversion every 10 min)
5. Put PCI (Phenol:Chloroform:Isoamylalcohol = 25:24:1) into the sample tube and mix well (voltex)
6. Gently inversion for 30 min using shaking incubator
7. after that, spin down sample tubes at 12,000 rpm for 30 min (twice, 25°C)
8. Keep the supernatant (~750ul/tube) and put into new 1.5ml tube
9. Then, put 5M NaCl(200ul) and cold Iso-propanol(600ul) into the each tube
10. Gently mix and incubate samples at -20°C for 30 min
11. Spin down samples at 12,000 rpm for 10 min
12. put off the supernatant and add 70% alcohol into tube (you can see the white pellet!)
13. Spin down samples at 12,000 rpm for 10 min and pour off the alcohol and repeat centrifuge step
14. Dry DNA pellet
15. Add 100~200ul ddH20 with RNAse(RNase 1ul/ddH2O 100ul)
Material information
2ml 기준
Chemical | Volume |
---|---|
CTAB buffer | 800 ul |
PCI | 800 ul |
BME | 16 ul |
Supernatant | 700 ul - 750 ul |
5M NaCl | 200 ul |
Iso-propanol | 600 ul |
EtOH (70%) | 500 ul |
TE buffer | 50 ul |
RNase A | 1 ul |
비고 | 추후 4 tube 합침 : 200ul |
50ml 기준(20X)
Chemical | Volume |
---|---|
CTAB buffer | 15ml |
PCI | 15ml |
BME | 320ul |
Supernatant | 12ml |
5M NaCl | 3ml |
Iso-propanol | 9ml |
EtOH (70%) | 10ml |
TE buffer | 1ml |
RNase A | 20ul |