Difference between revisions of "GBS"
From Crop Genomics Lab.
(Created page with "== Methods == zcat 4_NoIndex_L004_R1_001.fastq.gz | fastx_barcode_splitter.pl --bcfile barcode.1 --suffix ".fq" --prefix ./4_. --bol --exact mv 4_.unmatched.fq Full.fq /data1/...") |
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== Methods == | == Methods == | ||
zcat 4_NoIndex_L004_R1_001.fastq.gz | fastx_barcode_splitter.pl --bcfile barcode.1 --suffix ".fq" --prefix ./4_. --bol --exact | zcat 4_NoIndex_L004_R1_001.fastq.gz | fastx_barcode_splitter.pl --bcfile barcode.1 --suffix ".fq" --prefix ./4_. --bol --exact | ||
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mv 4_.unmatched.fq Full.fq | mv 4_.unmatched.fq Full.fq | ||
+ | |||
/data1/program/NGSQCToolkit_v2.3.3/Trimming/TrimmingReads.pl -l 4 -i 4_.BA01.fq | /data1/program/NGSQCToolkit_v2.3.3/Trimming/TrimmingReads.pl -l 4 -i 4_.BA01.fq |
Revision as of 02:03, 22 December 2016
Methods
zcat 4_NoIndex_L004_R1_001.fastq.gz | fastx_barcode_splitter.pl --bcfile barcode.1 --suffix ".fq" --prefix ./4_. --bol --exact
mv 4_.unmatched.fq Full.fq
/data1/program/NGSQCToolkit_v2.3.3/Trimming/TrimmingReads.pl -l 4 -i 4_.BA01.fq