Difference between revisions of "GeneInfo2Figure"
From Crop Genomics Lab.
(Created page with "== GeneInfo2Figure_v1.0.py == You can draw figure using gene info file {| class="wikitable" |- ! Command |- | USAGE : python GeneInfo2Figure_v1.0.py config_file > output.svg...") |
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== GeneInfo2Figure_v1.0.py == | == GeneInfo2Figure_v1.0.py == | ||
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| + | 63:/home/alima90/py/GeneInfo2Figure_v1.0.py | ||
You can draw figure using gene info file | You can draw figure using gene info file | ||
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===Config File=== | ===Config File=== | ||
gene_info_file=FilePath | gene_info_file=FilePath | ||
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highlight_gene_list=geneA,geneB,geneC | highlight_gene_list=geneA,geneB,geneC | ||
| − | backborn_color= | + | |
| + | backborn_color=rgb(135,206,250) | ||
| + | |||
arrow_size=5 | arrow_size=5 | ||
| − | gene_color= | + | |
| − | highlight_gene_color= | + | gene_color=blue |
| + | |||
| + | highlight_gene_color=red | ||
=== Gene Info File === | === Gene Info File === | ||
Latest revision as of 08:19, 17 December 2014
GeneInfo2Figure_v1.0.py
63:/home/alima90/py/GeneInfo2Figure_v1.0.py
You can draw figure using gene info file
| Command |
|---|
| USAGE : python GeneInfo2Figure_v1.0.py config_file > output.svg |
Config File
gene_info_file=FilePath
highlight_gene_list=geneA,geneB,geneC
backborn_color=rgb(135,206,250)
arrow_size=5
gene_color=blue
highlight_gene_color=red
Gene Info File
Gene info file contains gene or repeat information The header of Gene info File is below
| Gene info file header |
|---|
| Gene_name Type ChrNo Start end strand |
Each information is separated by tab mRNA,CDS,UTR,repeat and insertion can be Type you can add any type by modify code +, - can be strand insertion and repeat type has strand as '.'
