Difference between revisions of "GeneInfo2Figure"

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(GeneInfo2Figure_v1.0.py)
(Config File)
 
(One intermediate revision by one user not shown)
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== GeneInfo2Figure_v1.0.py ==
 
== GeneInfo2Figure_v1.0.py ==
  
/home/alima90/py/GeneInfo2Figure_v1.0.py
+
63:/home/alima90/py/GeneInfo2Figure_v1.0.py
  
 
You can draw figure using gene info file
 
You can draw figure using gene info file
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highlight_gene_list=geneA,geneB,geneC
 
highlight_gene_list=geneA,geneB,geneC
  
backborn_color='rgb(135,206,250)'
+
backborn_color=rgb(135,206,250)
  
 
arrow_size=5
 
arrow_size=5
  
gene_color='blue'
+
gene_color=blue
  
highlight_gene_color='red'
+
highlight_gene_color=red
  
 
=== Gene Info File ===
 
=== Gene Info File ===

Latest revision as of 08:19, 17 December 2014

GeneInfo2Figure_v1.0.py

63:/home/alima90/py/GeneInfo2Figure_v1.0.py

You can draw figure using gene info file

Command
USAGE : python GeneInfo2Figure_v1.0.py config_file > output.svg

Config File

gene_info_file=FilePath

highlight_gene_list=geneA,geneB,geneC

backborn_color=rgb(135,206,250)

arrow_size=5

gene_color=blue

highlight_gene_color=red

Gene Info File

Gene info file contains gene or repeat information The header of Gene info File is below

Gene info file header
Gene_name Type ChrNo Start end strand

Each information is separated by tab mRNA,CDS,UTR,repeat and insertion can be Type you can add any type by modify code +, - can be strand insertion and repeat type has strand as '.'