Difference between revisions of "GeneInfo2Figure"
From Crop Genomics Lab.
(Created page with "== GeneInfo2Figure_v1.0.py == You can draw figure using gene info file {| class="wikitable" |- ! Command |- | USAGE : python GeneInfo2Figure_v1.0.py config_file > output.svg...") |
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===Config File=== | ===Config File=== | ||
gene_info_file=FilePath | gene_info_file=FilePath | ||
| + | |||
highlight_gene_list=geneA,geneB,geneC | highlight_gene_list=geneA,geneB,geneC | ||
| + | |||
backborn_color='rgb(135,206,250)' | backborn_color='rgb(135,206,250)' | ||
| + | |||
arrow_size=5 | arrow_size=5 | ||
| + | |||
gene_color='blue' | gene_color='blue' | ||
| + | |||
highlight_gene_color='red' | highlight_gene_color='red' | ||
Revision as of 07:10, 17 December 2014
GeneInfo2Figure_v1.0.py
You can draw figure using gene info file
| Command |
|---|
| USAGE : python GeneInfo2Figure_v1.0.py config_file > output.svg |
Config File
gene_info_file=FilePath
highlight_gene_list=geneA,geneB,geneC
backborn_color='rgb(135,206,250)'
arrow_size=5
gene_color='blue'
highlight_gene_color='red'
Gene Info File
Gene info file contains gene or repeat information The header of Gene info File is below
| Gene info file header |
|---|
| Gene_name Type ChrNo Start end strand |
Each information is separated by tab mRNA,CDS,UTR,repeat and insertion can be Type you can add any type by modify code +, - can be strand insertion and repeat type has strand as '.'
