Difference between revisions of "GeneInfo2Figure"

From Crop Genomics Lab.
Jump to: navigation, search
(Config File)
(GeneInfo2Figure_v1.0.py)
Line 1: Line 1:
 
== GeneInfo2Figure_v1.0.py ==
 
== GeneInfo2Figure_v1.0.py ==
 +
 +
/home/alima90/py/GeneInfo2Figure_v1.0.py
  
 
You can draw figure using gene info file
 
You can draw figure using gene info file

Revision as of 07:25, 17 December 2014

GeneInfo2Figure_v1.0.py

/home/alima90/py/GeneInfo2Figure_v1.0.py

You can draw figure using gene info file

Command
USAGE : python GeneInfo2Figure_v1.0.py config_file > output.svg

Config File

gene_info_file=FilePath

highlight_gene_list=geneA,geneB,geneC

backborn_color='rgb(135,206,250)'

arrow_size=5

gene_color='blue'

highlight_gene_color='red'

Gene Info File

Gene info file contains gene or repeat information The header of Gene info File is below

Gene info file header
Gene_name Type ChrNo Start end strand

Each information is separated by tab mRNA,CDS,UTR,repeat and insertion can be Type you can add any type by modify code +, - can be strand insertion and repeat type has strand as '.'