Difference between revisions of "MCScanX2figure"
From Crop Genomics Lab.
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== mcscanx2figure.py == | == mcscanx2figure.py == | ||
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'''<big>Visualizing tool for MCScanX synteny block using SVG</big> | '''<big>Visualizing tool for MCScanX synteny block using SVG</big> | ||
''' | ''' | ||
| + | [[File:Mc2f1.jpg|1000px|frameless|center]] | ||
| + | README | ||
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| + | {| class="wikitable" | ||
| + | |- | ||
| + | ! Command | ||
| + | |- | ||
| + | | python mcscanx2figure.py config_file mcscanx_file(collinearity) block_number > output.svg | ||
| + | |} | ||
| + | === Config file === | ||
| + | MCScanX2figure config file example | ||
| + | [[File:MC2F config.txt]] | ||
== mcscanx2figure_schematic.py == | == mcscanx2figure_schematic.py == | ||
| − | 63:/ | + | 63:/home/alima90/py/mcscanx2figure_schematic_v1.1.py |
'''<big>Visualizing tool for MCScanX synteny block as schematic figure using SVG</big> | '''<big>Visualizing tool for MCScanX synteny block as schematic figure using SVG</big> | ||
''' | ''' | ||
| + | [[File:Mc2fs2.jpg|1000px|frameless|center]] | ||
| + | README | ||
| − | + | {| class="wikitable" | |
| − | + | |- | |
| − | + | ! Command | |
| − | + | |- | |
| − | + | | python mcscanx2figure_schematic.py config_file mcscanx_file(collinearity) block_number > output.svg | |
| + | |} | ||
| + | === Config file === | ||
| + | MCScanX2figure_schematic config file example | ||
| − | + | [[File:MC2FS.docx|thumbnail]] | |
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Latest revision as of 06:19, 17 December 2014
Contents |
mcscanx2figure.py
63:/home/alima90/py/mcscanx2figure.py
Visualizing tool for MCScanX synteny block using SVG
README
| Command |
|---|
| python mcscanx2figure.py config_file mcscanx_file(collinearity) block_number > output.svg |
Config file
MCScanX2figure config file example
mcscanx2figure_schematic.py
63:/home/alima90/py/mcscanx2figure_schematic_v1.1.py
Visualizing tool for MCScanX synteny block as schematic figure using SVG
README
| Command |
|---|
| python mcscanx2figure_schematic.py config_file mcscanx_file(collinearity) block_number > output.svg |
Config file
MCScanX2figure_schematic config file example
