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'''This web page for introducing Crop Genomics Lab. and announcement of [[research result]].'''
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'''This is a web page for introducing Crop Genomics Lab. and announcement of research results.'''
  
Professor: [[Suk-Ha Lee]].
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[[File:Poster.jpg|400px|thumbnail|If you want to get more information about this programs, please click [[International Bioinformatics Training Programs|here]]]]
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[[File:20150819_2.jpg|400px|thumbnail|If you want to get more information about this programs, please click [[Bioinformatics training in Bogor|here]]]]
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Professor: [[Suk-Ha Lee]]
  
 
[[Lab member]]
 
[[Lab member]]
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[[Bioinformatics]]
 
[[Bioinformatics]]
  
Address: 151-921 4105 CropGenomics Lab., CALS, Seoul National University, 1st, Gwanak-ro, Daehak-dong, Gwanak-gu, Seoul, Republic of Korea.
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[[Activity]]
  
Phone: +82-2-880-4555
 
  
  
'''[CAUTIONS]'''
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Genome assembly data
  
'''When you download file from FTP pages (below).'''
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<html><a href="http://plantgenomics.snu.ac.kr/JBrowse-1.12.1/index.html?data=data%2FVigna_radiata&loc=Vr01%3A24007801..24022040&tracks=DNA%2CGenes&highlight=" class="image"><img alt="Mungbean Jbrowse.jpg" src="/mediawiki-1.21.3/images/9/95/Mungbean_Jbrowse_fix.jpg" width="240" height="64" /></a></html>
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<html><a href="ftp://plantgenomics.snu.ac.kr/mungbean_data/" class="image"><img alt="Mungbean FTP.jpg" src="/mediawiki-1.21.3/images/1/1b/Mungbean_FTP_fix.jpg" width="240" height="64" /></a></html>
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<html><br><br><a href="http://plantgenomics.snu.ac.kr/JBrowse/index.html?data=data%2FVangularis&loc=1%3A10840001..11725000&tracks=DNA%2CGenes%2CmRNAs%2CSSRmarker%2CQTL&highlight=" class="image"><img alt="Adzuki_bean_Jbrowse.jpg" src="/mediawiki-1.21.3/images/c/cf/Adzuki_bean_Jbrowse.jpg" width="240" height="64" /></a></html>
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<html><a href="ftp://plantgenomics.snu.ac.kr/adzuki_ver3/" class="image"><img alt="Adzuki_bean_ftp.jpg" src="/mediawiki-1.21.3/images/b/b5/Adzuki_bean_ftp.jpg" width="240" height="64" /></a></html>
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<html><br><br><a href="http://plantgenomics.snu.ac.kr/sequenceserver" class="image"><img alt="Web_blast.jpg" src="/mediawiki-1.21.3/images/d/dc/Web_blast.jpg" width="240" height="64" /></a></html>
  
'''Using "$ wget copied_link_address" in Linux.'''
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<html><a href="http://plantgenomics.snu.ac.kr/JBrowse/index.html?data=data%2FJcurcas&loc=chr1%3A1000..10599778&tracks=DNA%2CContigs%2CGenes%2CmRNAs&highlight=" class="image"><img alt="Jatropha_Jbrowse.png" src="/mediawiki-1.21.3/images/9/9d/Jatropha_Jbrowse.png" width="240" height="64" /></a></html>
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<html><a href="ftp://plantgenomics.snu.ac.kr/jatropha_data/pacbio_assembly/" class="image"><img alt="Jatropha assembly FTP.png" src="/mediawiki-1.21.3/images/8/89/Jatropha_assembly_FTP.png" width="240" height="64" /></a></html>
  
'' '''You cannot read contents of files on browser because of university firewall policy''' ''
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<html><a href="ftp://plantgenomics.snu.ac.kr/Lactuca_indica/" class="image"><img alt="LI1.jpg" src="/mediawiki-1.21.3/images/4/41/LI1.jpg" width="240" height="64" /></a></html>
  
'' '''There will be an error message''' ''
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See [[Publication]] for details.
  
  
<html><a href="http://plantgenomics.snu.ac.kr/JBrowse/index.html?data=data%2FVradi_ver6&loc=Vr01%3A54801..213600&tracks=DNA%2CScaffolds%2CRepeat%20Sequences%2CGenes%2CmRNAs%2CSNPs%2CGmax%20QTLs&highlight=Vr01%3A23996..46240" class="image"><img alt="Mungbean Jbrowse.jpg" src="/mediawiki-1.21.3/images/9/95/Mungbean_Jbrowse_fix.jpg" width="240" height="64" /></a></html>
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Address: 151-921 4105 CropGenomics Lab., CALS, Seoul National University, 1st, Gwanak-ro, Daehak-dong, Gwanak-gu, Seoul, Republic of Korea.
<html><a href="http://plantgenomics.snu.ac.kr/data/mungbean_data/" class="image"><img alt="Mungbean FTP.jpg" src="/mediawiki-1.21.3/images/1/1b/Mungbean_FTP_fix.jpg" width="240" height="64" /></a></html>
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<html><a href="http://plantgenomics.snu.ac.kr/sequenceserver" class="image"><img alt="Mungbean blast.jpg" src="/mediawiki-1.21.3/images/f/f5/Mungbean_blast.jpg" width="240" height="64" /></a></html>
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Phone: +82-2-880-4555
<html><br><br><a href="http://plantgenomics.snu.ac.kr/JBrowse/index.html?data=data%2FJcurcas_ver0&loc=scaffold_0%3A1195501..1274900&tracks=DNA%2Ccontigs%2Crepeatmasker%2Cgenes%2CmRNAs%2CEST(BLASTN)%2CEST(est2genome)%2CProtein(BLASTX)%2CProtein(protein2genome)&highlight=" class="image"><img alt="Jatropha_Jbrowse.jpg" src="/mediawiki-1.21.3/images/e/e1/Jatropha_Jbrowse.jpg"  width="240" height="64" /></a></html>
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<html><br><br><a href="http://plantgenomics.snu.ac.kr/JBrowse/index.html?data=data%2FVangularis&loc=1%3A10840001..11725000&tracks=DNA%2CGenes%2CmRNAs%2CSSRmarker%2CQTL&highlight=" class="image"><img alt="Adzuki_bean_Jbrowse.jpg" src="/mediawiki-1.21.3/images/c/cf/Adzuki_bean_Jbrowse.jpg" width="240" height="64" /></a></html>
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E-mail for FTP access: kev8305@gmail.com

Revision as of 00:32, 16 October 2017

Crop Genomics Lab.


This is a web page for introducing Crop Genomics Lab. and announcement of research results.

If you want to get more information about this programs, please click here
If you want to get more information about this programs, please click here

Professor: Suk-Ha Lee

Lab member

Publication

Protocol

Bioinformatics

Activity


Genome assembly data

Mungbean Jbrowse.jpg Mungbean FTP.jpg

Adzuki_bean_Jbrowse.jpg Adzuki_bean_ftp.jpg

Web_blast.jpg

Jatropha_Jbrowse.png Jatropha assembly FTP.png

LI1.jpg

See Publication for details.


Address: 151-921 4105 CropGenomics Lab., CALS, Seoul National University, 1st, Gwanak-ro, Daehak-dong, Gwanak-gu, Seoul, Republic of Korea.

Phone: +82-2-880-4555

E-mail for FTP access: kev8305@gmail.com