Difference between revisions of "ProteinAlignment2Figure"
From Crop Genomics Lab.
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== ProteinAlignment2Figure.py == | == ProteinAlignment2Figure.py == | ||
| − | [[File:P2F.JPG| | + | [[File:P2F.JPG|500px|frameless]] |
63:/home/alima90/py/ProteinAlignment2Figure.py | 63:/home/alima90/py/ProteinAlignment2Figure.py | ||
| + | |||
| + | You can draw figure using protein alignment file(*.aln) | ||
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| − | + | Each information is separated by tab | |
mRNA,CDS,UTR and repeat can be Type | mRNA,CDS,UTR and repeat can be Type | ||
+,- can be strand | +,- can be strand | ||
| − | + | Repeat type has two strand 1 and 2. 1 means first repeat in repeat pair, 2 means second repeat in repeat pair. | |
| − | + | If you want to change color, you have to change the code manually. | |
Latest revision as of 06:39, 17 December 2014
ProteinAlignment2Figure.py
63:/home/alima90/py/ProteinAlignment2Figure.py
You can draw figure using protein alignment file(*.aln)
| Command |
|---|
| USAGE : python ProteinAlignment2Figure_v1.0.py ProteinAlignmentFile GeneInfoFile > out.svg |
Gene Info File
Gene info file contains gene or repeat information The header of Gene info File is below
| Gene info file header |
|---|
| Gene_name Type ChrNo Start end strand |
Each information is separated by tab mRNA,CDS,UTR and repeat can be Type +,- can be strand Repeat type has two strand 1 and 2. 1 means first repeat in repeat pair, 2 means second repeat in repeat pair.
If you want to change color, you have to change the code manually.
