Difference between revisions of "ProteinAlignment2Figure"

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(ProteinAlignment2Figure.py)
(Gene Info File)
 
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each information is separated by tab
+
Each information is separated by tab
 
mRNA,CDS,UTR and repeat can be Type
 
mRNA,CDS,UTR and repeat can be Type
 
+,- can be strand
 
+,- can be strand
repeat type has two strand 1 and 2. 1 means first repeat in repeat pair, 2 means second repeat in repeat pair.
+
Repeat type has two strand 1 and 2. 1 means first repeat in repeat pair, 2 means second repeat in repeat pair.
  
if you want to change color, you have to change the code manually.
+
If you want to change color, you have to change the code manually.

Latest revision as of 06:39, 17 December 2014

ProteinAlignment2Figure.py

P2F.JPG

63:/home/alima90/py/ProteinAlignment2Figure.py

You can draw figure using protein alignment file(*.aln)

Command
USAGE : python ProteinAlignment2Figure_v1.0.py ProteinAlignmentFile GeneInfoFile > out.svg

Gene Info File

Gene info file contains gene or repeat information The header of Gene info File is below

Gene info file header
Gene_name Type ChrNo Start end strand

Each information is separated by tab mRNA,CDS,UTR and repeat can be Type +,- can be strand Repeat type has two strand 1 and 2. 1 means first repeat in repeat pair, 2 means second repeat in repeat pair.

If you want to change color, you have to change the code manually.