Difference between revisions of "ProteinAlignment2Figure"

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== ProteinAlignment2Figure.py ==
== ProteinAlignment2Figure.py ==

Revision as of 06:38, 17 December 2014




USAGE : python ProteinAlignment2Figure_v1.0.py ProteinAlignmentFile GeneInfoFile > out.svg

Gene Info File

Gene info file contains gene or repeat information The header of Gene info File is below

Gene info file header
Gene_name Type ChrNo Start end strand

each information is separated by tab mRNA,CDS,UTR and repeat can be Type +,- can be strand repeat type has two strand 1 and 2. 1 means first repeat in repeat pair, 2 means second repeat in repeat pair.

if you want to change color, you have to change the code manually.