Difference between revisions of "ProteinAlignment2Figure"
From Crop Genomics Lab.
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Revision as of 06:39, 17 December 2014
ProteinAlignment2Figure.py
63:/home/alima90/py/ProteinAlignment2Figure.py
You can draw figure using protein alignment file(*.aln)
| Command |
|---|
| USAGE : python ProteinAlignment2Figure_v1.0.py ProteinAlignmentFile GeneInfoFile > out.svg |
Gene Info File
Gene info file contains gene or repeat information The header of Gene info File is below
| Gene info file header |
|---|
| Gene_name Type ChrNo Start end strand |
each information is separated by tab mRNA,CDS,UTR and repeat can be Type +,- can be strand repeat type has two strand 1 and 2. 1 means first repeat in repeat pair, 2 means second repeat in repeat pair.
if you want to change color, you have to change the code manually.
