Difference between revisions of "Python code created by Shim"

Revision as of 11:36, 26 March 2014

using class as a high speed searchable variation

    class ClassName:
         def __init__(self,variation1,variation2,,,,):
              self.variation1=variation1
              self.variation2=variation2
              ...

import the files include this class then, input data which you'd like to input to an instance like this way

    ClassName(Data4variation1,Data4variation2,,,,)

Variation typing code

determine variation type from three files: fasta, gff3, vcf(generated by samtools pipeline)