Python code created by Shim

From Crop Genomics Lab.
Revision as of 11:36, 26 March 2014 by Sangrea Shim (Talk | contribs)

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using class as a high speed searchable variation

    class ClassName:
         def __init__(self,variation1,variation2,,,,):
              self.variation1=variation1
              self.variation2=variation2
              ...

import the files include this class then, input data which you'd like to input to an instance like this way

    ClassName(Data4variation1,Data4variation2,,,,)

Variation typing code

determine variation type from three files: fasta, gff3, vcf(generated by samtools pipeline)