Difference between revisions of "Re-sequencing"
From Crop Genomics Lab.
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'''bowtie2 pipe''' | '''bowtie2 pipe''' | ||
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1. Make bowtie index | 1. Make bowtie index | ||
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| bowtie2-build reference.fa reference.fa | | bowtie2-build reference.fa reference.fa | ||
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+ | 2. Align | ||
{| class="wikitable" | {| class="wikitable" | ||
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Revision as of 04:04, 27 May 2014
bwa pipe
bowtie2 pipe
1. Make bowtie index
bowtie2-build reference.fa reference.fa |
2. Align
bowtie2-align -p num_threads -x reference_index -1 paired_1 -2 paired_2 -S sam_output |
variation discovery