Re-sequencing
From Crop Genomics Lab.
Revision as of 04:04, 27 May 2014 by
Alima90
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bwa pipe
bowtie2 pipe
1. Make bowtie index
bowtie2-build reference.fa reference.fa
2. Align
bowtie2-align -p num_threads -x reference_index -1 paired_1 -2 paired_2 -S sam_output
variation discovery
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