Difference between revisions of "Redbean"
From Crop Genomics Lab.
(Created page with "'''Synteny based assembly''' 193:$/data2/k821209/Redbean/ver1/maker/adzuki.ref.maker.output/ - reference sequences : adzuki.ref.fasta - gene prediction : adzuki.ref.al...") |
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'''Synteny based assembly''' | '''Synteny based assembly''' | ||
| − | 193: | + | 193:/data2/k821209/Redbean/ver1/maker/adzuki.ref.maker.output/ |
- reference sequences : adzuki.ref.fasta | - reference sequences : adzuki.ref.fasta | ||
- gene prediction : adzuki.ref.all.gff.maker.gff.sorted.gff3 | - gene prediction : adzuki.ref.all.gff.maker.gff.sorted.gff3 | ||
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'''Transcriptome assembly and illumina reads''' | '''Transcriptome assembly and illumina reads''' | ||
| − | 63: | + | 63:/data1/Sequencing/NICEM/Redbean/ |
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| + | '''MCSCANX''' | ||
| + | 193:/data2/k821209/Redbean/ver1/maker/adzuki.ref.maker.output/mcscanx/Va2Va.collinearity.kaks | ||
| + | V.angularis within genome synteny | ||
Revision as of 13:18, 27 June 2014
Synteny based assembly
193:/data2/k821209/Redbean/ver1/maker/adzuki.ref.maker.output/ - reference sequences : adzuki.ref.fasta - gene prediction : adzuki.ref.all.gff.maker.gff.sorted.gff3 - coding sequences : adzuki.ref.fasta.cds.fa - peptide sequences : adzuki.ref.fasta.pep.fa
Transcriptome assembly and illumina reads
63:/data1/Sequencing/NICEM/Redbean/
MCSCANX
193:/data2/k821209/Redbean/ver1/maker/adzuki.ref.maker.output/mcscanx/Va2Va.collinearity.kaks
V.angularis within genome synteny
