Difference between revisions of "Redbean"
From Crop Genomics Lab.
| Line 11: | Line 11: | ||
'''MCSCANX results''' | '''MCSCANX results''' | ||
193:/data2/k821209/Redbean/ver1/maker/adzuki.ref.maker.output/mcscanx/ | 193:/data2/k821209/Redbean/ver1/maker/adzuki.ref.maker.output/mcscanx/ | ||
| − | -Va2Va : V.angularis, within genome synteny | + | - Va2Va : V.angularis, within genome synteny |
| − | -Va2Gm : V.angularis vs G.max | + | - Va2Gm : V.angularis vs G.max |
| − | -Va2Pv : V.angularis vs P.vulgaris | + | - Va2Pv : V.angularis vs P.vulgaris |
| − | -Va2Vr : V.angularis vs V.radiata | + | - Va2Vr : V.angularis vs V.radiata |
Revision as of 09:42, 28 June 2014
Synteny based assembly
193:/data2/k821209/Redbean/ver1/maker/adzuki.ref.maker.output/ - reference sequences : adzuki.ref.fasta - gene prediction : adzuki.ref.all.gff.maker.gff.sorted.gff3 - coding sequences : adzuki.ref.fasta.cds.fa - peptide sequences : adzuki.ref.fasta.pep.fa
Transcriptome assembly and illumina reads
63:/data1/Sequencing/NICEM/Redbean/
MCSCANX results
193:/data2/k821209/Redbean/ver1/maker/adzuki.ref.maker.output/mcscanx/ - Va2Va : V.angularis, within genome synteny - Va2Gm : V.angularis vs G.max - Va2Pv : V.angularis vs P.vulgaris - Va2Vr : V.angularis vs V.radiata
