Difference between revisions of "Redbean"
From Crop Genomics Lab.
| Line 6: | Line 6: | ||
- peptide sequences : adzuki.ref.fasta.pep.fa | - peptide sequences : adzuki.ref.fasta.pep.fa | ||
| − | '''Transcriptome | + | '''Transcriptome assemblies and illumina reads''' |
63:/data1/Sequencing/NICEM/Redbean/ | 63:/data1/Sequencing/NICEM/Redbean/ | ||
Revision as of 09:42, 28 June 2014
Synteny based assembly
193:/data2/k821209/Redbean/ver1/maker/adzuki.ref.maker.output/ - reference sequences : adzuki.ref.fasta - gene prediction : adzuki.ref.all.gff.maker.gff.sorted.gff3 - coding sequences : adzuki.ref.fasta.cds.fa - peptide sequences : adzuki.ref.fasta.pep.fa
Transcriptome assemblies and illumina reads
63:/data1/Sequencing/NICEM/Redbean/
MCSCANX results
193:/data2/k821209/Redbean/ver1/maker/adzuki.ref.maker.output/mcscanx/ - Va2Va : V.angularis, within genome synteny - Va2Gm : V.angularis vs G.max - Va2Pv : V.angularis vs P.vulgaris - Va2Vr : V.angularis vs V.radiata
