Redbean

Synteny based assembly

193:/data2/k821209/Redbean/ver1/maker/adzuki.ref.maker.output/
- reference sequences : adzuki.ref.fasta 
- gene prediction     : adzuki.ref.all.gff.maker.gff.sorted.gff3 
- coding sequences    : adzuki.ref.fasta.cds.fa
- peptide sequences   : adzuki.ref.fasta.pep.fa
- interpro annotation : adzuki.ref.fasta.pep.fa.noasterix.fa.tsv

Transcriptome assemblies and illumina reads

63:/data1/Sequencing/NICEM/Redbean/

MCSCANX results

193:/data2/k821209/Redbean/ver1/maker/adzuki.ref.maker.output/mcscanx/
- Va2Va : V.angularis, within genome synteny
- Va2Gm : V.angularis vs G.max
- Va2Pv : V.angularis vs P.vulgaris
- Va2Vr : V.angularis vs V.radiata

MCSCANX results - QTL

244:/home/hayasen/Workspace/Vigna/redbean/mcscanx/Va2Gm/Va2Gm.collinearity.kaks.block_r_q_pos.dic.QTL_info.txt