Redbean

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Synteny based assembly 

193:/data2/k821209/Redbean/ver1/maker/adzuki.ref.maker.output/
- reference sequences : adzuki.ref.fasta 
- gene prediction     : adzuki.ref.all.gff.maker.gff.sorted.gff3 
- coding sequences    : adzuki.ref.fasta.cds.fa
- peptide sequences   : adzuki.ref.fasta.pep.fa

Transcriptome assembly and illumina reads 

63:/data1/Sequencing/NICEM/Redbean/

MCSCANX 

193:/data2/k821209/Redbean/ver1/maker/adzuki.ref.maker.output/mcscanx/Va2Va.collinearity.kaks

V.angularis, within genome synteny

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