Difference between revisions of "Tips kang"
From Crop Genomics Lab.
| Line 5: | Line 5: | ||
'''Excel'''<br /> | '''Excel'''<br /> | ||
=TEXT(2.2323,"(0.00)")<br /> | =TEXT(2.2323,"(0.00)")<br /> | ||
| − | (2.23)<br /> | + | (2.23)<br /><br /> |
| − | + | ||
'''Softwares'''<br /> | '''Softwares'''<br /> | ||
''Deconseq''<br /> | ''Deconseq''<br /> | ||
| + | Illumina read의 contamination을 확인한다. | ||
63:/data/program/deconseq-standalone-0.4.3 <br /> | 63:/data/program/deconseq-standalone-0.4.3 <br /> | ||
/usr/bin/perl deconseq.pl -keep_tmp_files -f 800_both.fq -dbs bact,vir,arch -dbs_retain gmax <br /> | /usr/bin/perl deconseq.pl -keep_tmp_files -f 800_both.fq -dbs bact,vir,arch -dbs_retain gmax <br /> | ||
| − | |||
<references /> | <references /> | ||
Revision as of 07:01, 28 February 2014
Fisher's exact test in python
from scipy import stats
oddsratio, pvalue = stats.fisher_exact([[A,B], [C, D]]) [1]
Excel
=TEXT(2.2323,"(0.00)")
(2.23)
Softwares
Deconseq
Illumina read의 contamination을 확인한다.
63:/data/program/deconseq-standalone-0.4.3
/usr/bin/perl deconseq.pl -keep_tmp_files -f 800_both.fq -dbs bact,vir,arch -dbs_retain gmax
