Difference between revisions of "Tips kang"
From Crop Genomics Lab.
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| − | '''Fisher's exact test | + | '''Python'''<br /> |
| + | ''Fisher's exact test''<br /> | ||
from scipy import stats<br /> | from scipy import stats<br /> | ||
oddsratio, pvalue = stats.fisher_exact([[A,B], [C, D]]) <ref name="fishers exact">[http://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.fisher_exact.html scipy, fisher's exact] </ref><br /> | oddsratio, pvalue = stats.fisher_exact([[A,B], [C, D]]) <ref name="fishers exact">[http://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.fisher_exact.html scipy, fisher's exact] </ref><br /> | ||
Revision as of 09:30, 28 February 2014
Python
Fisher's exact test
from scipy import stats
oddsratio, pvalue = stats.fisher_exact([[A,B], [C, D]]) [1]
Excel
=TEXT(2.2323,"(0.00)")
(2.23)
Softwares
Deconseq
Illumina read의 contamination을 확인한다.
63:/data/program/deconseq-standalone-0.4.3
/usr/bin/perl deconseq.pl -keep_tmp_files -f 800_both.fq -dbs bact,vir,arch -dbs_retain gmax
