Difference between revisions of "Tips kang"
From Crop Genomics Lab.
| Line 8: | Line 8: | ||
(2.23)<br /><br /> | (2.23)<br /><br /> | ||
'''Softwares'''<br /> | '''Softwares'''<br /> | ||
| − | ''Deconseq''<br /> | + | ''Deconseq'' <ref>[http://deconseq.sourceforge.net/ deconseq]</ref><br /> |
Illumina read의 contamination을 확인한다. | Illumina read의 contamination을 확인한다. | ||
63:/data/program/deconseq-standalone-0.4.3 <br /> | 63:/data/program/deconseq-standalone-0.4.3 <br /> | ||
/usr/bin/perl deconseq.pl -keep_tmp_files -f 800_both.fq -dbs bact,vir,arch -dbs_retain gmax <br /> | /usr/bin/perl deconseq.pl -keep_tmp_files -f 800_both.fq -dbs bact,vir,arch -dbs_retain gmax <br /> | ||
<references /> | <references /> | ||
Revision as of 09:31, 28 February 2014
Python
Fisher's exact test
from scipy import stats
oddsratio, pvalue = stats.fisher_exact([[A,B], [C, D]]) [1]
Excel
=TEXT(2.2323,"(0.00)")
(2.23)
Softwares
Deconseq [2]
Illumina read의 contamination을 확인한다.
63:/data/program/deconseq-standalone-0.4.3
/usr/bin/perl deconseq.pl -keep_tmp_files -f 800_both.fq -dbs bact,vir,arch -dbs_retain gmax
