Tips kang

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Python
Fisher's exact test
from scipy import stats
oddsratio, pvalue = stats.fisher_exact([[A,B], [C, D]]) [1]

Excel
=TEXT(2.2323,"(0.00)")
(2.23)

Softwares
Deconseq
Illumina read의 contamination을 확인한다. 63:/data/program/deconseq-standalone-0.4.3
/usr/bin/perl deconseq.pl -keep_tmp_files -f 800_both.fq -dbs bact,vir,arch -dbs_retain gmax

  1. scipy, fisher's exact