Trinity

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cat fq_list.1 | parallel -j 2 "mkdir ./{}_output_trinity ; /data1/program/trinityrnaseq-2.1.1/Trinity --seqType fq --max_memory 2G --left {}_1.fastq.gz --right {}_2.fastq.gz --CPU 5 --output ./{}_output_trinity --normalize_max_read_cov 50 --trimmomatic 1>./{}_output_trinity/Trinity.log 2>./{}_output_trinity/Trinity.err ; /data1/program/trinityrnaseq-2.1.1/util/TrinityStats.pl ./{}_output_trinity/Trinity.fasta > ./{}_output_trinity/Trinity.fasta.stat"