User contributions
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- 04:33, 6 October 2018 (diff | hist) . . (+6) . . 2018 June Taeyoung Lab note (→pheatmap) (current)
- 03:16, 10 July 2018 (diff | hist) . . (0) . . File:RNA-seq.pptx (Alima90 uploaded a new version of "File:RNA-seq.pptx") (current)
- 04:12, 3 July 2018 (diff | hist) . . (+1) . . Re-sequencing (→Resequencing pipeline ppt) (current)
- 04:12, 3 July 2018 (diff | hist) . . (+66) . . Re-sequencing (→Resequencing pipeline ppt)
- 04:12, 3 July 2018 (diff | hist) . . (0) . . N File:Information processing after resequencing.pptx (current)
- 04:37, 2 July 2018 (diff | hist) . . (+32) . . RNA-seq (current)
- 04:36, 2 July 2018 (diff | hist) . . (0) . . N File:RNA-seq.pptx
- 04:36, 2 July 2018 (diff | hist) . . (+23) . . RNA-seq
- 04:36, 2 July 2018 (diff | hist) . . (-35) . . GBS (current)
- 04:35, 2 July 2018 (diff | hist) . . (+43) . . GBS
- 04:35, 2 July 2018 (diff | hist) . . (+35) . . GBS
- 04:35, 2 July 2018 (diff | hist) . . (0) . . N File:GBS pre-processing.pptx (current)
- 04:34, 2 July 2018 (diff | hist) . . (+28) . . GBS
- 07:29, 29 June 2018 (diff | hist) . . (+125) . . N EdgeR (Created page with "== Read counting == python ../htseq/python2/scripts/htseq-count -t CDS f2.sam Jcu_new_first.all.gff.gtf > f2.sam.htseq.count") (current)
- 07:32, 14 June 2018 (diff | hist) . . (+649) . . 2018 June Taeyoung Lab note
- 07:15, 14 June 2018 (diff | hist) . . (+17) . . 2018 June Taeyoung Lab note
- 07:15, 14 June 2018 (diff | hist) . . (+115) . . N 2018 June Taeyoung Lab note (Created page with "==UpSetR plot== upset(Data,sets = c("Lus","Ptr","Rco","Jcu","Mes","Hbr"),order.by="freq",empty.intersections="on")")
- 07:15, 14 June 2018 (diff | hist) . . (+32) . . 2018 Taeyoung Lab note (current)
- 01:43, 23 May 2018 (diff | hist) . . (+32) . . N 2018 Taeyoung Lab note (Created page with "2018 April Taeyoung Lab note")
- 05:49, 18 May 2018 (diff | hist) . . (+48) . . N Ubuntu (Created page with "==Command== 1. Listing library sudo ldcofnig -v") (current)
- 10:39, 11 April 2018 (diff | hist) . . (+129) . . N 2018 April Taeyoung Lab note (Created page with "== Phylogenetic tree using d3.m0.2== phyml -i variant.SG.vcf.without.vege.maf0.01.recode.vcf.SNP.d3.m0.2.fa.phylip -d nt -b 500") (current)
- 10:39, 11 April 2018 (diff | hist) . . (+32) . . N 2108 Taeyoung Lab note (Created page with "2018 April Taeyoung Lab note") (current)
- 06:47, 9 April 2018 (diff | hist) . . (+36) . . N LSI (Created page with "<ref>Insert footnote text here</ref>") (current)
- 04:06, 15 March 2018 (diff | hist) . . (+20) . . Protocol (current)
- 04:05, 15 March 2018 (diff | hist) . . (-1) . . Sugar analysis (current)
- 04:05, 15 March 2018 (diff | hist) . . (+516) . . N Sugar analysis (Created page with "== '''<Sugar analysis protocol> ''' == 1. Grind seeds to a fine powder using a coffee bean grinder, then pass through a 100-㎛ standard testing sieve. 2. Weigh a 1g sample a...")
- 01:28, 18 January 2018 (diff | hist) . . (+2) . . Re-sequencing
- 01:27, 18 January 2018 (diff | hist) . . (+4) . . Re-sequencing
- 01:27, 18 January 2018 (diff | hist) . . (+73) . . Re-sequencing
- 01:26, 18 January 2018 (diff | hist) . . (0) . . N File:Resequencing pipeline.pptx (current)
- 00:30, 2 January 2018 (diff | hist) . . (+11) . . Tuxedo pipeline (current)
- 02:24, 18 December 2017 (diff | hist) . . (+2) . . 2017 Dec Taeyoung Lab note (current)
- 02:24, 18 December 2017 (diff | hist) . . (+108) . . N 2017 Dec Taeyoung Lab note (Created page with "TASSEL 1. Genotype + Phenotype + PC is joined by intersectjoin 2. GLM association with 1,000 iteration")
- 02:22, 18 December 2017 (diff | hist) . . (+32) . . 2017 Taeyoung Lab note (current)
- 01:07, 30 November 2017 (diff | hist) . . (+1,075) . . 2017 Nov Taeyoung Lab note (current)
- 00:16, 30 November 2017 (diff | hist) . . (+32) . . 2017 Taeyoung Lab note
- 06:00, 8 November 2017 (diff | hist) . . (+263) . . N 2017 Nov Taeyoung Lab note (Created page with "== LD using Hapview == java -jar /alima9002/program/Haploview/Haploview.jar -nogui -out variant.SG.vcf.SNP.Q30.d5.hapview.out.rsq.%s -dprime -svg -compressedpng -minMAF 0.01...")
- 05:07, 31 October 2017 (diff | hist) . . (+131) . . 2017 Oct Taeyoung Lab note (current)
- 09:58, 23 October 2017 (diff | hist) . . (+291) . . N 2017 Oct Taeyoung Lab note (Created page with " ==Plink== ===make bed=== /alima9002/program/plink-1.07-x86_64/plink --noweb --make-bed --ped variant.SG.vcf.without.vege.SNP.d3.m0.2.plink.Chr01.ped --map variant.SG.vcf.wit...")
- 09:58, 23 October 2017 (diff | hist) . . (+32) . . 2017 Taeyoung Lab note
- 00:23, 19 September 2017 (diff | hist) . . (+4) . . 2017 Sep Taeyoung Lab note (→Structure Plotting) (current)
- 00:23, 19 September 2017 (diff | hist) . . (+512) . . 2017 Sep Taeyoung Lab note
- 07:09, 15 September 2017 (diff | hist) . . (+167) . . 2017 Sep Taeyoung Lab note
- 06:34, 12 September 2017 (diff | hist) . . (-11) . . 2017 Sep Taeyoung Lab note
- 06:34, 12 September 2017 (diff | hist) . . (+6) . . 2017 Sep Taeyoung Lab note
- 06:34, 12 September 2017 (diff | hist) . . (+379) . . N 2017 Sep Taeyoung Lab note (Created page with "===Fst=== vcftools --vcf variant.SG.vcf.SNP.Q30.d5.vcf --weir-fst-pop SG_Landrace.bamlist --weir-fst-pop SG_Cultivar.bamlist --weir-fst-pop SG_Vege.bamlist --fst-window-size 1...")
- 06:13, 12 September 2017 (diff | hist) . . (+32) . . 2017 Taeyoung Lab note
- 05:16, 27 June 2017 (diff | hist) . . (-166) . . 2017 May Taeyoung Lab note (→BEASTgene) (current)
- 05:16, 27 June 2017 (diff | hist) . . (+166) . . 2017 May Taeyoung Lab note
- 01:31, 29 May 2017 (diff | hist) . . (+121) . . 2017 May Taeyoung Lab note
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