Difference between revisions of "GeneInfo2Figure"
From Crop Genomics Lab.
(→GeneInfo2Figure_v1.0.py) |
(→Config File) |
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Line 17: | Line 17: | ||
highlight_gene_list=geneA,geneB,geneC | highlight_gene_list=geneA,geneB,geneC | ||
− | backborn_color= | + | backborn_color=rgb(135,206,250) |
arrow_size=5 | arrow_size=5 | ||
− | gene_color= | + | gene_color=blue |
− | highlight_gene_color= | + | highlight_gene_color=red |
=== Gene Info File === | === Gene Info File === |
Latest revision as of 08:19, 17 December 2014
GeneInfo2Figure_v1.0.py
63:/home/alima90/py/GeneInfo2Figure_v1.0.py
You can draw figure using gene info file
Command |
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USAGE : python GeneInfo2Figure_v1.0.py config_file > output.svg |
Config File
gene_info_file=FilePath
highlight_gene_list=geneA,geneB,geneC
backborn_color=rgb(135,206,250)
arrow_size=5
gene_color=blue
highlight_gene_color=red
Gene Info File
Gene info file contains gene or repeat information The header of Gene info File is below
Gene info file header |
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Gene_name Type ChrNo Start end strand |
Each information is separated by tab mRNA,CDS,UTR,repeat and insertion can be Type you can add any type by modify code +, - can be strand insertion and repeat type has strand as '.'