Difference between revisions of "2017 May Taeyoung Lab note"

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Revision as of 04:37, 11 May 2017

Novel seq

1. Align using mrFast 2. assemble unmapped read using AbySS 3. running novelseq 

/alima9002/program/novelseq-upload$ ./novel_cluster /alima9002/novelseq/raw CS-12.W82.mrfast.OEA.all.sam Gmax.275.sat.parsed /alima9002/novelseq/raw/chr /alima9002/novelseq/raw/CS-12.fastq.trimmed /alima9002/novelseq/raw/CS-12.W82.mrfast.out.all.ins.size 100000000
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