Difference between revisions of "GeneInfo2Figure"
From Crop Genomics Lab.
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(→GeneInfo2Figure_v1.0.py) |
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== GeneInfo2Figure_v1.0.py == | == GeneInfo2Figure_v1.0.py == | ||
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+ | /home/alima90/py/GeneInfo2Figure_v1.0.py | ||
You can draw figure using gene info file | You can draw figure using gene info file |
Revision as of 07:25, 17 December 2014
GeneInfo2Figure_v1.0.py
/home/alima90/py/GeneInfo2Figure_v1.0.py
You can draw figure using gene info file
Command |
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USAGE : python GeneInfo2Figure_v1.0.py config_file > output.svg |
Config File
gene_info_file=FilePath
highlight_gene_list=geneA,geneB,geneC
backborn_color='rgb(135,206,250)'
arrow_size=5
gene_color='blue'
highlight_gene_color='red'
Gene Info File
Gene info file contains gene or repeat information The header of Gene info File is below
Gene info file header |
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Gene_name Type ChrNo Start end strand |
Each information is separated by tab mRNA,CDS,UTR,repeat and insertion can be Type you can add any type by modify code +, - can be strand insertion and repeat type has strand as '.'