Difference between revisions of "GeneInfo2Figure"
From Crop Genomics Lab.
(Created page with "== GeneInfo2Figure_v1.0.py == You can draw figure using gene info file {| class="wikitable" |- ! Command |- | USAGE : python GeneInfo2Figure_v1.0.py config_file > output.svg...") |
Revision as of 07:10, 17 December 2014
GeneInfo2Figure_v1.0.py
You can draw figure using gene info file
| Command |
|---|
| USAGE : python GeneInfo2Figure_v1.0.py config_file > output.svg |
Config File
gene_info_file=FilePath highlight_gene_list=geneA,geneB,geneC backborn_color='rgb(135,206,250)' arrow_size=5 gene_color='blue' highlight_gene_color='red'
Gene Info File
Gene info file contains gene or repeat information The header of Gene info File is below
| Gene info file header |
|---|
| Gene_name Type ChrNo Start end strand |
Each information is separated by tab mRNA,CDS,UTR,repeat and insertion can be Type you can add any type by modify code +, - can be strand insertion and repeat type has strand as '.'
